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    Home ยป Recipes ยป The Best Vegan Cake and Cupcake Recipes

    Apple Pie Cupcakes

    Published: Aug 8, 2025 by Megan Calipari ยท This post may contain affiliate links ยท Leave a Comment

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    These Apple Pie Cupcakes are well-spiced and filled with gooey apple pie filling! They are tender and moist and are the perfect dessert for any Fall celebration.

    Spiced Apple Pie Cupcakes in a small wooden board.

    If you couldn't tell, I have been gearing up for Fall weeks now. This year I wanted to focus on expanding my Autumn recipes, since everyone loves to cook and bake when there is a chill in the air. So, I've added classic baking recipes like Vegan Apple Pie and Vegan Pumpkin Pie, and some fun non-baking recipes like my Bourbon Apple Cider Cocktail.

    And these Apple Pie Cupcakes are a fun addition to the mix! The spice cupcakes are light and tender and filled with gooey apple pie filling. Then, they're topped with fluffy buttercream frosting and even more apple pie filling! This is the perfect Autumn dessert for any occasion!

    Jump to:
    • Why You'll Love This Recipe
    • Ingredient Notes
    • How to Make the Apple Pie Filling
    • How to Make the Cupcakes
    • Recipe FAQs
    • Expert Recipe Tips
    • Looking for More Fall Baking Recipes?
    • ๐Ÿ“– Recipe
    • ๐Ÿ’ฌ Comments

    Why You'll Love This Recipe

    • This recipe utilizes simple, easy-to-find ingredients.
    • And it is surprisingly easy to make!
    • These Apple Pie Cupcakes are completely dairy-free and vegan, so anyone can enjoy them.
    • They are well-spiced and packed with apple pie filling.
    • And most importantly, they are absolutely delicious!

    Ingredient Notes

    Ingredients for making this recipe in small bowls on a linen cloth.

    Granny Smith Apples: The filling for these cupcakes is similar to my Caramelized Apples recipe and the filling for my Apple Pie Cookies! I prefer Granny Smith, but Honeycrisp is a close second.

    Brown Sugar: Brown sugar gives the cupcakes a delicious, warm background flavor. All out? Here is my blog post on How to Make Homemade Brown Sugar.

    Pumpkin Pie Spice: I always keep a jar of pumpkin pie spice in my pantry for easy Fall baking.

    Non-Dairy Milk: I used oat milk, but any non-dairy milk will work for this recipe.

    Non-Dairy Butter: My favorite is Country Cock Plant Butter Sticks. Use what you like, but be sure to use a butter that comes in stick or block form, not in a tub.

    How to Make the Apple Pie Filling

    Chopped apple on a wooden cutting board.

    Step 1. To make the apple pie filling, first, peel, core and chop 2 small Granny Smith apples into about ยผ-inch chunks.

    Apple pie filling in a stainless steel skillet.

    Step 2. Combine chopped apples, maple syrup, pumpkin pie spice, and salt in a 10" skillet over medium heat. Cook, stirring occasionally until the apples begin to soften, 5 minutes.

    Then, add the cornstarch slurry while stirring constantly. The mixture should thicken quickly- in about 15 seconds.

    Next, remove from the heat and add the vegan butter. Stir until the butter has melted, then transfer the filling to a heat-safe container. Place the apple pie filling in the refrigerator to chill for at least 2 hours while you make the cupcakes.

    How to Make the Cupcakes

    Wet ingredients in a mixing bowl.

    Step 1. In a large bowl, combine brown sugar, non-dairy milk, canola oil and vanilla extract. Whisk well.

    Spiced cupcake better in a mixing bowl on a wooden surface.

    Step 2. Then add flour, baking powder, pumpkin pie spice and salt and whisk to form the cupcake batter.

    Cupcake batter scooped into a lined cupcake pan.

    Step 3. Scoop the cupcake batter into a lined cupcake pan, filling each liner โ…” of the way full.

    Then, bake the cupcakes in a 350ยฐF oven for 18-22 minutes, or until a toothpick inserted into the center of a cupcake comes out clean.

    Allow the cupcakes to cool completely before filling and frosting.

    Vanilla frosting in a large mixing bowl.

    Step 4. While the cupcakes cool make the vanilla buttercream.

    In a large bowl using a hand mixer, or in the bowl of a stand mixer fitted with the paddle attachment, cream the non-dairy butter until it is completely smooth.

    Then, add powdered sugar and mix on low until combined.

    Finally, add non-dairy milk and vanilla and mix on medium speed until light and fluffy.

    Cupcakes filled with apple pie filling.

    Step 5. When the cupcakes are cool, use a paring knife to hollow the center out.

    Then, fill the cavity in the center of the cupcakes with apple pie filling using a small spoon.

    Cupcakes topped with frosting and apple pie filling.

    Step 6. Then, use a 3-tablespoon cookie scoop to top each cupcake with vanilla frosting.

    Then, use a mini offset spatula or a butter knife to press into the center while twisting the cupcake to create a well.

    Use a small spoon to fill the well with more apple pie filling and serve!

    Recipe FAQs

    How should I store these Apple Pie Cupcakes?

    Store these cupcakes in an airtight container in the refrigerator for up to 5 days.

    What is the secret to super-moist cupcakes?

    Sugar, oil and milk all contribute to a cake or cupcakes' moisture. So, it is important to have enough of them in a recipe. And don't reduce them when making the recipe!

    What are the best apples for cupcakes?

    My favorite apples for baking are Granny Smith because they are tart and hold their shape. A close second is Honeycrisp.

    Expert Recipe Tips

    It is important for the apples to be diced really small for this recipe! If they are too large, they will not fit into the center of the cupcakes.

    Be sure to use a non-dairy butter that comes in stick form, not in a tub. The kind in the tub is too soft for making frosting.

    Completely cool the cupcakes before filling and frosting them. Buttercream melts very easily!

    Spiced Apple Pie Cupcake with a bite taken out of it on a cupcake liner.

    Looking for More Fall Baking Recipes?

    • A slice of Vegan Pumpkin Pie with a dollop of whipped cream on a small white plate.
      Vegan Pumpkin Pie
    • Dirty Chai Cake on a plate with a bite taken out of it.
      Dirty Chai Cake (Vegan!)
    • Vegan pumpkin bread on a plate with a fork.
      Vegan Pumpkin Bread
    • Vegan Chai Cookies stacked on a white cake stand.
      Vegan Chai Cookies

    If you tried this Vegan Apple Pie Cupcakes recipe or any other recipe on my website, please leave a ๐ŸŒŸ star rating and let me know how it went in the ๐Ÿ“ comments below. Thanks for visiting today!

    ๐Ÿ“– Recipe

    A Vegan Spiced Apple Pie Cupcake with a bite taken out of it to show the cener.

    Apple Pie Cupcakes

    Megan Calipari
    These Apple Pie Cupcakes are well-spiced and filled with gooey apple pie filling! They are tender and moist and are the perfect dessert for any Fall celebration.
    No ratings yet
    Print Recipe Pin Recipe
    Prep Time 1 hour hr
    Cook Time 25 minutes mins
    Chill Time 1 hour hr
    Course Dessert
    Cuisine American
    Servings 12 Cupcakes
    Calories 471 kcal

    Equipment

    • 1 Large Mixing Bowl
    • 1 Hand Mixer or Stand Mixer with paddle attachment
    • 1 10 inch Skillet
    • 1 Cutting Board
    • 1 Chefs Knife
    • 1 3 Tablespoon Cookie Scoop

    Ingredients
      

    For The Apple Pie Filling

    • 2 Small Granny Smith Apples, peeled and chopped into ยผ" cubes See note!
    • โ…“ Cup Maple Syrup
    • 1 ยผ teaspoon Pumpkin Pie Spice
    • 1 pinch Kosher Salt
    • ยผ Cup Water
    • 2 teaspoon Cornstarch
    • 1 tablespoon Non-Dairy Butter

    For the Spice Cupcakes

    • 1 ยพ Cups All-Purpose Flour
    • 1 tablespoon Cornstarch
    • 2 ยฝ teaspoon Pumpkin Pie Spice
    • 1 ยพ teaspoon Baking Powder
    • ยฝ teaspoon Kosher Salt
    • 1 Cup Light Brown Sugar, tightly packed
    • ยพ Cup Non-Dairy Milk
    • โ…“ Cup Canola Oil
    • 2 teaspoon Vanilla Extract

    for The Vanilla Frosting

    • 12 tablespoon Non-Dairy Butter, room temperature See note!
    • 3 Cups Powdered Sugar, sifted
    • 1 ยฝ tablespoon Non-Dairy Milk
    • 1 ยฝ teaspoon Vanilla Extract

    Instructions
     

    Make the Apple Pie Filling

    • In a small cup, combine the water and cornstarch, stir and set aside.
      2 teaspoon Cornstarch, ยผ Cup Water
    • In a 10" skillet, combine chopped apples, maple syrup, pumpkin pie spice, and salt. Cook over medium heat, stirring occasionally, until the apples start to soften, but are not mushy, 5 minutes. Then, add the cornstarch slurry, stirring quickly with a spatula. It should thicken the mixture in about 15 seconds.
      2 Small Granny Smith Apples, peeled and chopped into ยผ" cubes, โ…“ Cup Maple Syrup, 1 ยผ teaspoon Pumpkin Pie Spice, 1 pinch Kosher Salt
    • Remove from heat and add the non-dairy butter. Stir until melted. Then, transfer the apple pie filling to a heat-safe bowl and place in the refrigerator for at least 1 ยฝ hours.
      1 tablespoon Non-Dairy Butter

    Make the Spice Cupcakes

    • Preheat oven to 350*F. Line a cupcake tray with 12 paper liners.
    • In a medium bowl, combine flour, cornstarch, pumpkin pie spice, baking powder, and salt. Whisk and set aside.
      1 ยพ Cups All-Purpose Flour, 1 tablespoon Cornstarch, 2 ยฝ teaspoon Pumpkin Pie Spice, 1 ยพ teaspoon Baking Powder, ยฝ teaspoon Kosher Salt
    • In a large mixing bowl, combine brown sugar, non-dairy milk, canola oil and vanilla extract. Whisk well, breaking up and clumps of brown sugar, then add the dry ingredient and whisk to form the batter.
      1 Cup Light Brown Sugar, tightly packed, ยพ Cup Non-Dairy Milk, โ…“ Cup Canola Oil, 2 teaspoon Vanilla Extract
    • Use an ice cream scoop or a spoon to fill each cupcake liner โ…” of the way full, then bake the cupcakes in a 350*F oven for 19-21 minutes, or until a toothpick inserted into the center of a cupcake comes out clean.
    • Allow the cupcakes to cool completely. See note!

    Make the Buttercream Frosting

    • In a large bowl using a hand mixer or in the bowl and a stand mixer fitted with the paddle attachment, cream the vegan butter until completely smooth. Then add the powdered sugar and mix on low until combined. Next, add the non-dairy milk and vanilla and mix on medium speed until light and fluffy.
      12 tablespoon Non-Dairy Butter, room temperature, 3 Cups Powdered Sugar, sifted, 1 ยฝ tablespoon Non-Dairy Milk, 1 ยฝ teaspoon Vanilla Extract

    Fill and Frost the Cupcakes

    • Use a paring knife to hollow out the center of each cupcake. Use a small spoon to fill each cavity with apple pie filling.
    • Then, use a 3-tablespoon cookie scoop to scoop frosting on top of the cupcakes. Use a mini offset spatula or a butter knife to press into the center of the frosting while twisting the cupcake to create a little frosting bowl.
    • Use the same small spoon to fill each frosting bowl with apple pie filling. sprinkle with cinnamon to garnish if desired and serve!

    Notes

    It is important for the apples to be diced really small for this recipe! If they are too large, they will not fit into the center of the cupcakes.
    2 small apples should be about 2 ยฝ cups of chopped apple.
    Be sure to use a non-dairy butter that comes in stick form, not in a tub.
    It is important for the cupcakes to be completely cool before filling and frosting. Buttercream melts very easily!

    Nutrition

    Serving: 1CupcakeCalories: 471kcalCarbohydrates: 74gProtein: 3gFat: 19gSaturated Fat: 3gPolyunsaturated Fat: 6gMonounsaturated Fat: 10gTrans Fat: 2gSodium: 277mgPotassium: 123mgFiber: 1gSugar: 56gVitamin A: 80IUVitamin C: 2mgCalcium: 92mgIron: 1mg
    Tried this recipe?Let us know how it was!
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    Headshot of me in a white shirt

    Hi, I'm Megan! I'm a trained pastry chef who is passionate about creating vegan desserts and meals for everyone. My recipes use simple ingredients and methods to create delicious results.

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